Performance
PBMC 3K
| Function | Severo.jl | Seurat | Speedup |
|---|---|---|---|
| filter_counts | 0.066542 | 0.434 | 6.71x |
| normalize | 0.06 | 0.212 | 3.53x |
| highly_var.. | 0.362585 | 1.114 | 3.07x |
| scale(hvf) | 0.020628 | 2.66 | 128x |
| pca | 0.123401 | 6.54 | 52.9x |
1.3M brain cells (10X)
| Function | Severo.jl | Seurat | Speedup |
|---|---|---|---|
| filter_counts | 74.04964 | 1490.6 | 20x |
| normalize | 72.24885 | 1844.9 | 25x |
| highly_var.. | 36.32924 | 2716.39 | 75x |
| scale(hvf) | 6.894031 | 19086.6 | 2800x |
| pca | 70.62987 | 27290.0 | 390x |
| shared_nn | 947.86579 | 2872.46 | 3x |
| cluster | 819.51106 | 9976.62 | 12x |
| de | 3835.9645 | 6 days | x |